The NETDIAMOND Platform is a web-based system designed to record patient information in clinical studies, focused on a cohort of HFpEF patients. The system was designed to easily create a data schema based on groups of clinical data. For each group, the different institutions involved can read/edit the data of their patients. In the end, […]

view all on Biomedical Informatics

GTO is a toolkit for genomics and proteomics, namely for FASTQ, FASTA and SEQ formats, with many complementary tools. The toolkit is for Unix-based systems, built for ultra-fast computations. GTO supports pipes for easy integration with the sub-programs belonging to GTO as well as external tools. GTO works as LEGOs, since it allows the […]

view all on Genomics

SCALEUS is a data migration tool that can be used on top of traditional systems to enable semantic web features. This user-friendly tool help users easily create new semantic web applications from scratch. Targeted at the biomedical domain, this web-based platform offers, in a single package, a high-perfomance database, data integration algorithms and optimized text […]

view all on Knowledge Management

Ann2RDF is an interoperable semantic layer that unifies text-mining results originated from different tools, information extracted by curators, and baseline data already available in reference knowledge bases, enabling a proper exploration using semantic web technologies. This result in a more suitable transition process, in which desired annotations are enriched with the possibility to be shared, […]

view all on Text Mining