Calendar
May 2024 S M T W T F S 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31
José Luis Oliveira
Universidade de Aveiro, DETI / IEETA
3810-193 Aveiro, Portugal
jlo@ua.pt
(+351) 234 370 500
MIND is a repository of microarray experiments that handles storage, management and analysis of microarray data. It is supported by an infrastructure prepared to integrate dynamically further functionalities (Quality Control assurance, data processing, data mining, visualization, reports, etc.).
ANACONDA is a software package specially developed for the study of genes’ primary structure. It uses gene sequences downloaded from public databases, as FASTA and GenBank, and it applies a set of statistical and visualization methods in different ways, to reveal information about codon context, codon usage, nucleotide repeats within open reading frames (ORFeome) and others.
A PACS solution for echocardiography laboratories that provides a cost-efficient digital archive, and enables the acquisition, storage, transmission and visualization of DICOM cardiovascular ultrasound sequences.
Funding entity: FCT (PTDC/BIA-BCM/72251/2006)
Period: 2008-2011
Funding entity: FCT (PTDC/BIA-BCM/64745/2006)
Period: 2009-2011
Funding entity: FCT (PTDC/MAT/72974/2006)
Period: 2006-2008
DNA Microarray technology is one of the most promising new technologies for global gene expression analysis. This technology is sophisticated, very expensive, highly interdisciplinary and produces vast amounts of data whose management and analysis pose significant challenges. This project aims to study new bi-clustering approaches that […]
Funding entity: HFSP Research Grant
Period: 2005-2008
The very few quantitative mRNA mistranslation studies carried out to date indicate that the average decoding error ranges from 10-4 to 10-5 errors per codon decoded. However, no systematic study has yet been carried out to rank mRNA sequences according to
decoding error and no methodology has yet […]
Funding entity: IST FP6 (IST2002-507585) – NoE (Network of Excelence)
Period: 2003-2006
There is a great potential for synergy between medical informatics and bioinformatics with a view on continuity and individualisation of healthcare, so that the benefits of the human genome sequence can reach the population. A collaborative effort between those two disciplines is […]
Funding entity: IST FP5 (IST2001-39013)
Period: 2002-2004
UA/IEETA was the Project Coordinator
One goal currently challenging bio – and clinical informatics is to develop robust computational methods and tools to model, store, retrieve and analyse information at multiple levels of complexity, i.e., from molecule to organism. For example, the unification of heterogeneous databases under one virtual system is […]
Talk from Florentino Fernández Riverola, Dpto. de Informática – Universidade de Vigo
Current research lines and projects of the “Next Generation Information Systems” group, from University of Vigo, in Orense
A 14ª Reunião da Sociedade Portuguesa de Genética Humana irá realizar-se nos dias 18, 19 e 20 de Novembro de 2010, em Coimbra, no Auditório da Fundação Bissaya Barreto (Bencanta).
Mais informação na página da SPGH.
The 10th IEEE International Conference on Information Technology and Applications in Biomedicine,
will be held in Corfu, Greece, November 2-5, 2010 at Aquis Corfu Holiday Palace.
The Xth Spanish Symposium on Bioinformatics (JBI2010) take place in October 27-29, 2010 in Torremolinos-Málaga, Spain. Co-organised by the National Institute of Bioinformatics-Spain and the Portuguese Bioinformatics Network and hosted by the University of Malaga (Spain).
Place: Aveiro, Portugal
Date: 28 Jan- 2 Feb 2010
http://www.trna2010.com/
Place: Aveiro, Portugal
Date: December 8-10, 2006
http://www.ieeta.pt/ncb2006
Place: Aveiro, Portugal
Date: November 10-11, 2005
http://www.ieeta.pt/isbmda05
Books
O. Bodenreider, J.L Oliveira, and F. Rinaldi (Eds.)
Proceedings of the 6th International Symposium on Semantic Mining in Biomedicine (SMBM 2014), University of Aveiro, 2014
M. Santos (Ed.)
XVth National Congress of Biochemistry, 2006
ISBN 978-972-789-214-3
M. Santos (Ed.)
IIIrd National Meeting on RNA Biology, 2006
ISBN 978-972-789-215-0
J. L. Oliveira, V. Maojo, F. Martin-Sanchez, and A. S. Pereira (Eds.),
Biological and Medical Data Analysis, Springer, […]
A. Pereira, R. P. Lopes and J. L. Olivera
“SCALEUS-FD: A FAIR Data Tool for Biomedical Applications”
BioMed Research International, volume 2020, 2020 pdf
R. Lebre, L. B. Silva and C. Costa
“A Cloud-ready Architecture for Shared Medical Imaging Repository”
Journal of Digital Imaging, p. 1-12, 2020 pdf
J. R. Almeida, A. J. Pinho, J. L. Oliveira, O. Fajarda, D. Pratas
“GTO: […]
R. Lebre, M. Pedrosa, C. Costa
“A safe architecture for authorisation grant in healthcare ecosystems”
In ICHI 2020 – IEEE International Conference on Healthcare Informatics 2020, Oldenburg, Germany, December 2020.
A. Trifan, R. Antunes and J. L. Oliveira
“Machine learning for depression screening in online communities”
In 14th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2020, […]
P. M. Coloma, M. J. Schuemie, G. Trifirò, L. Furlong, E. V. Mulligen, A. Bauer-Mehren, P. Avillach, J. Kors, F. Sanz, J. Mestres, J. L. Oliveira, S. Boyer, E. A. Helgee, M. Molokhia, J. Matthews, D. Prieto-Merino, R. Gini, R. M. C. Herings, G. Mazzaglia, G. Picelli, L. Scotti, L. Pedersen, J. V. d. Lei, […]