A B C D E F G H I J K L M N O P R S T U V W X Y

G

geekcode - Static variable in class de.fuberlin.wiwiss.pubby.vocab.FOAF

A textual geekcode for this person, see http://www.geekcode.com/geek.html

gender - Static variable in class de.fuberlin.wiwiss.pubby.vocab.FOAF

The gender of this Agent (typically but not necessarily 'male' or 'female').

get(String) - Static method in class pt.ua.bioinformatics.coeus.data.Predicate

get(String) - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getAddSameAsStatements() - Method in class de.fuberlin.wiwiss.pubby.Dataset

getAliases() - Method in class de.fuberlin.wiwiss.pubby.negotiation.ContentTypeNegotiator.VariantSpec

getAnonymousPropertyValues(String, Property, boolean) - Method in interface de.fuberlin.wiwiss.pubby.DataSource

getAnonymousPropertyValues(String, Property, boolean) - Method in class de.fuberlin.wiwiss.pubby.ModelDataSource

getAnonymousPropertyValues(String, Property, boolean) - Method in class de.fuberlin.wiwiss.pubby.RemoteSPARQLDataSource

getAnonymousPropertyValues(MappedResource, Property, boolean) - Method in class de.fuberlin.wiwiss.pubby.servlets.BaseServlet

getAPI() - Static method in class pt.ua.bioinformatics.coeus.common.Boot

getApi() - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getBestMatch(String) - Method in class de.fuberlin.wiwiss.pubby.negotiation.ContentTypeNegotiator

getBestMatch(String, String) - Method in class de.fuberlin.wiwiss.pubby.negotiation.ContentTypeNegotiator

getBestMatch(List) - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getBlankNodeCount() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getComment() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription

getCommentProperties() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getConcept(String) - Static method in class pt.ua.bioinformatics.coeus.api.Internal

Loads Concept object information from COEUS SDB for given identifier.

getConcepts(Entity) - Static method in class pt.ua.bioinformatics.coeus.api.Internal

Loads all Concepts associated with the given Entity object.

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.InfoActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectDocumentationActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectJavadocActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectOntologyActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectScienceActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectSPARQLerActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.RedirectTranslateActionBean

getContext() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getCurrent(String) - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getData(String) - Method in class pt.ua.bioinformatics.coeus.api.DB

Retrieves data from the instance database.

getData() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getDataNegotiator() - Static method in class de.fuberlin.wiwiss.pubby.negotiation.PubbyNegotiator

getDataset() - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getDatasetBase() - Method in class de.fuberlin.wiwiss.pubby.Dataset

getDatasetURI() - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getDataSource() - Method in class de.fuberlin.wiwiss.pubby.Dataset

getDatatypeLabel() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.Value

getDataURL() - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getDefaultLanguage() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getDescription() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getDescription() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getDescription() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getDescription() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getDescription() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getDisease() - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getDisease(String) - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getDiseases() - Method in class pt.ua.bioinformatics.coeus.api.plugins.OMIMPlugin

getDiseases() - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getDiseases(String) - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getEndpoint() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getEndpointURL() - Method in interface de.fuberlin.wiwiss.pubby.DataSource

getEndpointURL() - Method in class de.fuberlin.wiwiss.pubby.ModelDataSource

getEndpointURL() - Method in class de.fuberlin.wiwiss.pubby.RemoteSPARQLDataSource

getEntity(String) - Static method in class pt.ua.bioinformatics.coeus.api.Internal

Loads Entity object information from COEUS SDB for given identifier.

getEnvironment() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getExtended() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

Loads individuals from the Concept that this Resource extends.

getExtended(String) - Method in class pt.ua.bioinformatics.coeus.domain.Resource

Loads individuals from the Concept that this Resource extends, based on given extension property.

getExtendsConcept() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getExtension() - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getExtension() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getFile() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getFormat() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getGenes() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getGenotypes() - Method in class pt.ua.bioinformatics.coeus.api.plugins.OMIMPlugin

getGenotypes() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getHasConcept() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getHasEntity() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getHasKey() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getHasResource() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getId() - Method in class pt.ua.bioinformatics.coeus.actions.InfoActionBean

getId() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getId() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getImageProperties() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getImageURL() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription

getIndexResource() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getIndividual(String, String) - Method in class pt.ua.bioinformatics.coeus.api.API

Gets all properties associated with a given individual.

getInferredModel() - Method in class pt.ua.bioinformatics.coeus.api.API

getInfmodel() - Static method in class pt.ua.bioinformatics.coeus.data.Storage

getInternal() - Method in class pt.ua.bioinformatics.coeus.api.API

getInversePathDataURL(Property) - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getInversePathPageURL(Property) - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getIsEntityOf() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getIsResourceOf() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getItem(String) - Static method in class pt.ua.bioinformatics.coeus.api.Internal

Loads Item object information from COEUS SDB for given identifier.

getJs_full() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getJs_id() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getJs_type() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getJs_value() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getJsonparser() - Method in class pt.ua.bioinformatics.coeus.api.API

getKey() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getKeyPrefix() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getLabel() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription

getLabel() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getLabel() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getLabel() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getLabel() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getLabel() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getLabelProperties() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getLoadsFrom() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getLocalName() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getLocalName() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.Value

getLocalName() - Method in class de.fuberlin.wiwiss.pubby.URIPrefixer

getLocation() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getMap() - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getMappedResourceFromDatasetURI(String) - Method in class de.fuberlin.wiwiss.pubby.Configuration

getMappedResourceFromDatasetURI(String, Configuration) - Method in class de.fuberlin.wiwiss.pubby.Dataset

getMappedResourceFromRelativeWebURI(String, boolean) - Method in class de.fuberlin.wiwiss.pubby.Configuration

getMappedResourceFromRelativeWebURI(String, boolean, Configuration) - Method in class de.fuberlin.wiwiss.pubby.Dataset

getMediaType() - Method in class de.fuberlin.wiwiss.pubby.negotiation.ContentTypeNegotiator.VariantSpec

getMediaType() - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getMethod() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getModel() - Method in class pt.ua.bioinformatics.coeus.api.API

getModel() - Static method in class pt.ua.bioinformatics.coeus.data.Storage

getModifiedRequest() - Method in class de.fuberlin.wiwiss.pubby.servlets.RequestParamHandler

getName() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getName() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getNames() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getNode() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.Value

getObj() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getOmimId() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getOntology() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getPageURL() - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getParameter(String) - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getParameterNames() - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getPath() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getPathDataURL(Property) - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getPathPageURL(Property) - Method in class de.fuberlin.wiwiss.pubby.MappedResource

getPathPageURL() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getPhenotypes() - Method in class pt.ua.bioinformatics.diseasecard.domain.Disease

getPrecedence(MediaRangeSpec) - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getPred() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getPredicates() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getPredicates() - Static method in class pt.ua.bioinformatics.coeus.data.Predicate

getPrefix() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getPrefix() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.Value

getPrefix() - Method in class de.fuberlin.wiwiss.pubby.URIPrefixer

getPrefixes() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getPrefixes() - Static method in class pt.ua.bioinformatics.coeus.api.PrefixFactory

getPrefixForURI(String) - Static method in class pt.ua.bioinformatics.coeus.api.PrefixFactory

Transforms a given URI into a prefix from the prefix map.

getPreviousDescribeQuery() - Method in class de.fuberlin.wiwiss.pubby.RemoteSPARQLDataSource

getProjectLink() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getProjectName() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getProperties() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription

getProperties() - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getProperties() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getProperties() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getProperties() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getProperty() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getPubbyNegotiator() - Static method in class de.fuberlin.wiwiss.pubby.negotiation.PubbyNegotiator

getPublisher() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getQuality() - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getQuery() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getQuery() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getReader() - Static method in class pt.ua.bioinformatics.coeus.data.connect.CSVFactory

getReasoner() - Static method in class pt.ua.bioinformatics.coeus.data.Storage

getRegex() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getRes() - Method in class pt.ua.bioinformatics.coeus.api.plugins.OMIMPlugin

getRes() - Method in class pt.ua.bioinformatics.coeus.data.connect.CSVFactory

getRes() - Method in class pt.ua.bioinformatics.coeus.data.connect.PluginFactory

getRes() - Method in class pt.ua.bioinformatics.coeus.data.connect.SPARQLFactory

getRes() - Method in class pt.ua.bioinformatics.coeus.data.connect.SQLFactory

getRes() - Method in class pt.ua.bioinformatics.coeus.data.connect.XMLFactory

getResource(String) - Method in class pt.ua.bioinformatics.coeus.api.API

Gets information for a given Resource in COEUS SDB.

getResource() - Method in class pt.ua.bioinformatics.coeus.data.Triplify

getResourceDescription(String) - Method in interface de.fuberlin.wiwiss.pubby.DataSource

getResourceDescription(String) - Method in class de.fuberlin.wiwiss.pubby.ModelDataSource

getResourceDescription(String) - Method in class de.fuberlin.wiwiss.pubby.RemoteSPARQLDataSource

getResourceDescription(MappedResource) - Method in class de.fuberlin.wiwiss.pubby.servlets.BaseServlet

getResourceDescriptionURL(String) - Method in interface de.fuberlin.wiwiss.pubby.DataSource

getResourceDescriptionURL(String) - Method in class de.fuberlin.wiwiss.pubby.ModelDataSource

getResourceDescriptionURL(String) - Method in class de.fuberlin.wiwiss.pubby.RemoteSPARQLDataSource

getResources() - Static method in class pt.ua.bioinformatics.coeus.common.Builder

getSdb() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getSearchResults(String) - Method in class pt.ua.bioinformatics.coeus.ext.COEUSActionBeanContext

getSetup() - Static method in class pt.ua.bioinformatics.coeus.common.Config

getSource() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getStore() - Static method in class pt.ua.bioinformatics.coeus.data.Storage

getSub() - Method in class pt.ua.bioinformatics.coeus.actions.TripleActionBean

getSubject() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getSubtype() - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getTitle() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getTitle() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getTitle() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getTitle() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getTitle() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getTokenFromConcept(String) - Static method in class pt.ua.bioinformatics.coeus.api.ConceptFactory

Converts a COEUS-formatted item name into a single token, usable on any other method.

getTokenFromItem(String) - Static method in class pt.ua.bioinformatics.coeus.api.ItemFactory

Converts a COEUS-formatted item name into a single token, usable on any other method.

getTranslated() - Method in class de.fuberlin.wiwiss.pubby.ModelTranslator

getTriple(String, String, String, String) - Method in class pt.ua.bioinformatics.coeus.api.API

Gets triple-based information according to given parameters.

getType() - Method in class de.fuberlin.wiwiss.pubby.negotiation.MediaRangeSpec

getURI() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription

getURI() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getURI() - Static method in class de.fuberlin.wiwiss.pubby.vocab.FOAF

The namespace of the vocabulary as a string

getUri() - Method in class pt.ua.bioinformatics.coeus.domain.Concept

getUri() - Method in class pt.ua.bioinformatics.coeus.domain.Entity

getUri() - Method in class pt.ua.bioinformatics.coeus.domain.InheritedResource

getUri() - Method in class pt.ua.bioinformatics.coeus.domain.Item

getUri() - Method in class pt.ua.bioinformatics.coeus.domain.Resource

getURIForPrefix(String) - Static method in class pt.ua.bioinformatics.coeus.api.PrefixFactory

Shorthand for prefix map access.

getValues() - Method in class de.fuberlin.wiwiss.pubby.ResourceDescription.ResourceProperty

getVelocityContext() - Method in class de.fuberlin.wiwiss.pubby.servlets.VelocityHelper

getWebApplicationBaseURI() - Method in class de.fuberlin.wiwiss.pubby.Configuration

getWebResourcePrefix() - Method in class de.fuberlin.wiwiss.pubby.Dataset

getWebURI() - Method in class de.fuberlin.wiwiss.pubby.MappedResource

givenname - Static variable in class de.fuberlin.wiwiss.pubby.vocab.FOAF

The given name of some person.

Group - Static variable in class de.fuberlin.wiwiss.pubby.vocab.FOAF

A class of Agents.