Common data types v1.8 The preferred or alternate names for this concept. Also referred to as "terms". The concept may occur in different databases with different identifiers and labels. The Semantic group to which the concept belongs. The concept may occur in different databases with different identifiers and labels. The database name that contains the ID. The database-specific ID for the concept. The specific element name. Affymetrix The Affinity Database 'AffinDB' contains affinity data for protein-ligand complexes of the PDB. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Anatomical Therapeutic Chemical classification The BindingDB is a public, web-accessible database of measured binding affinities for biomolecules, genetically or chemically modified biomolecules, and synthetic compounds. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Chemical Abstracts Service registry number <br>Link: "http://www.ncbi.nlm.nih.gov/portal/query.fcgi?CMD=search&DB=pccompound&term=" + ID <a href="http://ctd.mdibl.org/">The comparative toxicogenomics database</a>. <br>Added as to request from <a href="mailto:abauer-mehren@imim.es">Anna Bauer-Mehren</a>. ChEBI <br>Link: "http://www.ebi.ac.uk/chebi/searchFreeText.do?searchString=" + ID <a href="http://www.ebi.ac.uk/chembldb/index.php">ChEMBL</a> is a database of ca. 500,000 bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature and the data made available due to funding by the Wellcome Trust. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. ChemIDplus <br>Link: "http://chem.sis.nlm.nih.gov/chemidplus/ProxyServlet?objectHandle=DBMaint&actionHandle=default&nextPage=jsp/chemidlite/ResultScreen.jsp&TXTSUPERLISTID=" + ID DailyMed <br>Link: " http://dailymed.nlm.nih.gov/dailymed/lookup.cfm?start=1&ndc=" + ID Drug Bank <br>Link: "http://www.drugbank.ca/drugs/" + ID EcoGene Entrez-Gene <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=" + ID EMBL ErasmusMC internal thesaurus ID. Should not be returned to external services unless is explicilty requested. Events identified in the EU-ADR project (events like "anaphylactic shock" (AS), "acute renal failure" (ARF), "acute myocardial infarction" (AMI) etc.) FlyBase <br>Link: "http://www.flybase.org/reports/" + ID + ".html" Human Genome Database <br>Link: "http://www.gdb.org/gdb-bin/genera/genera/hgd/DBObject/GDB:" + ID Gene Ontology <br>Link: "http://www.godatabase.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=" + ID Gene Ontology ID Gene Ontology Term HGNC <br>Link: "http://www.genenames.org/data/hgnc_data.php?hgnc_id=" + ID <a href="http://cheminfo.u-strasbg.fr:8080/hGPCRlig/">hGPCRlig</a> is a bank of 3-D human G-Protein Coupled Receptor models and their known ligands. To obtain "hits" that will be able to provide with a major probability "leads". <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Human Metabolome Database <br>Link: "http://hmp.biology.ualberta.ca/~knox/hmdb/metabolites/"+"ID" Homologene <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt=HomoloGene&list_uids=" + ID ICD9-CM IUPAC International Chemical Identifier <br>Link: "http://www.ncbi.nlm.nih.gov/portal/query.fcgi?CMD=search&DB=pccompound&term=" + ID The International Standard Book Number (ISBN) is a unique numeric commercial book identifier based upon the 9-digit Standard Book Numbering (SBN) code. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Database of Receptors and Ion Channels. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. KEGD <br>Link: "http://www.genome.jp/dbget-bin/www_bget?drug:" + ID KEGG <br>Link: "http://www.genome.jp/dbget-bin/www_bget?cpd:" + ID Entrez-Gene <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=" + ID Medical Subject Headings Mouse Genome Database <br>Link: "http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:" + ID Textmining resource with extraction of semantic biomedical relations from text of <a href="http://www.biomedcentral.com/bmcbioinformatics/">BMC Bioinformatics.</a> journal using conditional random fields. <br>Added as to request from <a href="mailto:abauer-mehren@imim.es">Anna Bauer-Mehren</a>. <a href="http://www.bindingmoad.org/">Binding MOAD</a>'s goal is to be the largest collection of well resolved protein crystal structures with clearly identified biologically relevant ligands annotated with experimentally determined binding data extracted from literature. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Annotated compound library directed to nuclear receptors as a means for integrating the chemical and biological data being generated within this family. All data incorporated in NRacl were collected from public sources of information, mainly reviews and medicinal chemistry journals of the last 10 years. For each chemical entity within NRacl, data are organized in four main sections, namely, structural, chemical, biological, and bibliographical. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Ordered Locus Name OMIM <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=" + ID Protein Data Bank. The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. This service provides screening of novel psychoactive compounds for pharmacological and functional activity at cloned human or rodent CNS receptors, channels, and transporters. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. <a href="http://www.pharmgkb.org/">The Pharmacogenomics database</a>. <br>Added as to request from <a href="mailto:abauer-mehren@imim.es">Anna Bauer-Mehren</a>. Pubmed <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=" + ID + "&query_hl=1&itool=pubmed_docsum" PubChem Compound <br>Link: "http://www.ncbi.nlm.nih.gov/portal/query.fcgi?CMD=search&DB=pccompound&term=" + ID PubChem Substance <br>Link: "http://www.ncbi.nlm.nih.gov/portal/query.fcgi?CMD=search&DB=pcsubstance&term=" + ID Rat Genome Database <br>Link: "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=RGD:" + ID RatMap <br>Link: "http://www.ratmap.org/ShowSingleLocus.htm?accno=" + ID RefSeq <br>Link: "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=" + ID Saccharomyces Genome Database <br>Link: "http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=" + ID The Simplified Molecular Input Line Entry Specification or SMILES is a specification for unambiguously describing the structure of chemical molecules using short ASCII strings. <br>Added as to request from <a href="mailto:maria.carrascosa@upf.edu">Mari Carmen Carrascosa</a>. Swiss-Prot <br>Link: "http://ca.expasy.org/uniprot/" + ID Taxonomy ID UniGene <br>Link: "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=" + ID.substring(0, 2) + "&CID=" + ID.substring(3, ID.length()) Unified Medical Language System UniProt <br>Link: "http://ca.expasy.org/uniprot/" + ID WormBase <br>Link: "http://www.wormbase.org/db/gene/gene?name=" + ID ZFIN Conceptwiki <br>Link: "http://conceptwiki.org/index.php/Concept:" + Concept ID SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms (updated) NOMEDCT_2009_07_31 SNOMED Clinical Terms, 2009_07_31 International Health Terminology Standards Development Organization;SNOMED Clinical Terms;July 31, 2009;Chicago, IL;College of American Pathologists, 2009;http://ihtsdo.org;ENG Combinatorial Responses In Stress Pathways (CRISP) : http://www3.imperial.ac.uk/cisbic/research/crisp MEDLINE, the U.S. National Library of Medicine's bibliographic database, consists of more than 11 million articles from over 4,800 indexed titles. LNC (updated) LNC227 Logical Observation Identifier Names and Codes, 227 The Regenstrief Institute;Logical Observation Identifier Names and Codes (LOINC);Version 2.27;June 16, 2009;Indianapolis, IN;ENG Alcohol and Other Drug Thesaurus, 2000 Alcohol and Other Drug Thesaurus: A Guide to Concepts and Terminology in Substance Abuse and Addiction. 3rd. ed. [4 Volumes.] Bethesda, MD: National Institute on Alcohol Abuse and Alcoholism (NIAAA) and Center for Substance Abuse Prevention (CSAP), 2000 Canonical Clinical Problem Statement System, 1999. Canonical Clincial Problem Statement System, Version 1.0 June 23, 1999. Contact: sbrown@vumclib.mc.vanderbilt.edu Current Procedural Terminology, 2009. Current Procedural Terminology (CPT);American Medical Association;2009;Chicago, IL;ENG FMA FMA2_0 Foundational Model of Anatomy Ontology, 2_0 Cornelius Rosse MD DSc, Jose L.V. Mejino Jr. MD;Foundational Model of Anatomy;2.0;Seattle, WA;ENG HCPT HCPT2009 HCPCS Version of Current Procedural Terminology (CPT), 2009 Version of Physicians. Current Procedural Terminology (CPT) included in the Healthcare Common Procedure Coding System (HCPCS) Centers for Medicare and Medicaid Services HUGO (updated) HUGO2009_04 HUGO Gene Nomenclature, 2009_04 Eyre TA, Ducluzeau F, Sneddon TP, Povey S, Bruford EA and Lush MJ;HGNC Database;The HUGO Gene Nomenclature Database;European Bioinformatics Institute Wellcome Trust Genome Campus;United Kingdom;ENG ICD10 ICD10_1998 ICD10, 1998 International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva (Switzerland): World Health Organization, 1998. ICD10AM ICD10AM_2000 International Statistical Classification of Diseases and Related HealthProblems, 10th Revision, Australian Modification, January 2000 ReleaseInternational Statistical Classification of Diseases and Related Health Problems, 10th Revision, Australian Modification; 2ndEdition, published January 2000.Developed and Maintained by the National Centre for Classification in Health,University of Sydney, Faculty of Health ICD10PCS(updated) ICD10PCS_2009 ICD-10-PCS, 2009Centers for Medicare and MedicaidServices;ICD-10-PCS;Baltimore, MD;2009;http://www.cms.hhs.gov;ENG ICD10PCS(updated) ICD10PCS_2009 ICD-10-PCS, 2009Centers for Medicare and MedicaidServices;ICD-10-PCS;Baltimore, MD;2009;http://www.cms.hhs.gov;ENG Medicomp Systems;MEDCIN;v.30;Medicomp Systems;2008;Chantilly, VA Medisource Lexicon;August 01, 2009;Denver, CO;Multum Information Services, Inc. (updated) MTHFDA_2009_07_31 Metathesaurus FDA National Drug Code Directory, 2009_07_31 Metathesaurus additional entry terms for ICD-9-CM [computer file]: International Classification of Diseases, Ninth Revision, Clinical Modification;National Library of Medicine;October 1, 2009;Bethesda, MD U.S. Department of Health and Human Services;NCBI Taxonomy;National Institutes of Health, National Library of Medicine, National Center for Biotechnology Information;April 13, 2009;Bethesda, MD National Cancer Institute, National Institutes of Health;Sherri de Coronado;NCI Thesaurus;National Cancer Institute;OWL version, April 2009;Bethesda, MD NDDF_2009_08_07 National Drug Data File Plus Source Vocabulary, 2009_08_07. National Drug Data File Plus Source Vocabulary 2008;August 07, 2009;San Bruno, CA;First DataBank NDFRT NDFRT_2008_03_11 National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11 PDQ PDQ2007_02 Physician Data Query, 2007_02 RCD99 Clinical Terms Version 3 (CTV3) (Read Codes), 1999. Clinical Terms Version 3 (CTV3) (Read Codes) (Q199): National Health Service National Coding and Classification Centre; March, 1999. RCDAE_1999 Read thesaurus, American English Equivalents, 1999. American English equivalent of the Clinical Terms Version 3 (Q1, 1999), produced by NLM. Bethesda (MD): National Library ofMedicine, UMLS project,1999. RCDSY RCDSY_1999 Read thesaurus, Synthesized Terms, 1999. Synthesized Read terms (without initial bracketed letters) of the Clinical Terms Version 3 (Q1, 1999), produced by NLM. Bethesda (MD): National Library of Medicine, UMLS project,1999. RXNORM (updated) RXNORM_09AA_090908F RxNorm Vocabulary, 09AA_090908F RxNorm;META2009AA Full Update 2009_09_08;Bethesda, MD;National Library of Medicine SNOMED-2, 2. Cote, Roger A., editor. Systematized Nomenclature of Medicine. 2nd ed. Skokie (IL): College of American Pathologists, 1979. SNOMED update, 1982. Skokie (IL): College of American Pathologists, 1982. SNMI SNMI98 SNOMED International, 1998 Cote, Roger A., editor. Systematized Nomenclature of Human and Veterinary Medicine: SNOMED International. Northfield (IL): College of American Pathologists; Schaumburg (IL) American Veterinary Medical Association, Version 3.5, 1998. UMD2009 UMDNS: product category thesaurus, 2009 The Universal Medical Device Nomenclature System;ECRI;Plymouth Meeting;2009 UWDA173 University of Washington Digital Anatomist, 1.7.3 University of Washington Digital Anatomist, (UWDA). Seattle (WA): University of Washinton, Version 1.7.3, March, 2003. Jose Mejino, M.D.; email: onard@biostr.washington.edu (updated) VANDF_2009_07_29 Veterans Health Administration National Drug File, 2009_07_29 Veterans Health Administration National Drug File;July 29, 2009;Washington, DC;U.S. Department of Veterans Affairs The language-dependent text. The language ISO code as specified in RFC 3066. The language-dependent text. The language ISO code as specified in RFC 3066. This types where chosen as in SKOS (http://www.w3.org/TR/2009/REC-skos-reference-20090818/#labels) Semantic type is uniquely identified by ID.